Predicting DNA Recognition by Cys₂His₂ Zinc Finger Proteins

Welcome to our new site!

Site Description

For each C₂H₂ zinc finger protein we can predict the DNA binding sequence and generate sequence logo. This result can be used further to search genomic sequence for putative binding sites.

This site serves as an interface between user input and a set of prediction algorithms that are able to create the mentioned logos. It consists of a protein insertion screen, followed by the selection of the desired set of fingers, and the algorithm to be used. The results are delivered through a simple HTML page that contains the generated sequence logo.